PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226826.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 297aa    MW: 33455.7 Da    PI: 10.3709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226826.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-21221041099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + s+rl++p kf+++++   + + +  l  +sg +W+v+l  + + ++ ++++GW++Fvk+++L++gDf+vFk+dg+s+f  +v+++++
  XP_008226826.1  22 DF-SQRLRIPPKFVKNFNVR-PLH-KCALSGPSGIRWTVEL--EERENGLFFQNGWQGFVKDHHLEDGDFLVFKYDGESKF--KVTIYDR 104
                     44.457********666544.454.899*************..**********************************9999..8988886 PP
2B337.54.1e-122012821598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++pk+ a + g+ ++  k ++++d++grsW vkl++  + +s+r+ +++G  + ++an++  gD+ +F++++ s +   +++fr
  XP_008226826.1 201 GVSIPKEVAVTEGLLSK--KSMMIQDPTGRSWPVKLRVrgKLSSCRVNMSTGLLNCCNANQIIPGDTAIFEFVKPSLA--QIHIFR 282
                     489******99988844..569**************996666777799***********************9875544..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2411107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-2411107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.53612105IPR003340B3 DNA binding domain
CDDcd100171.57E-2214103No hitNo description
SMARTSM010197.8E-1815105IPR003340B3 DNA binding domain
PfamPF023624.9E-1916104IPR003340B3 DNA binding domain
CDDcd100175.85E-7182282No hitNo description
Gene3DG3DSA:2.40.330.102.6E-11186282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-13186284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.812187284IPR003340B3 DNA binding domain
SMARTSM010191.5E-6189284IPR003340B3 DNA binding domain
PfamPF023628.0E-10201282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MARKLVKPSL NKQSFFKILL GDFSQRLRIP PKFVKNFNVR PLHKCALSGP SGIRWTVELE  60
ERENGLFFQN GWQGFVKDHH LEDGDFLVFK YDGESKFKVT IYDRTACEKN VKVAERSGCP  120
VSLANKGKAQ VKEEIVDRET RNYNKNCQNR AIVSGRRSGN YVIPARRPAN DHVGATSTEP  180
VLFITKYSCF IVTFTRKLRY GVSIPKEVAV TEGLLSKKSM MIQDPTGRSW PVKLRVRGKL  240
SSCRVNMSTG LLNCCNANQI IPGDTAIFEF VKPSLAQIHI FRVGGNSVVL AEPDVKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226826.10.0PREDICTED: putative B3 domain-containing protein Os04g0347400
TrEMBLM5X8381e-95M5X838_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-22B3 family protein